

Available resources:

Catalogue Gene Cards

Expression Atlases App
CorvinaFlowerBerry developmentHydric StressBotrytis StressUse Expression Atlases App to navigate through different transcriptomic datasets (microarray or RNA-Seq) in order to test the expression of your genes across specific tissues and developmental stages.

AggGCNs App
BerryFruit+flowerLeafTissue independent3D plots toolAggregate gene-co-expression networks constructed using different tissue-specific RNA-Seq datasets (tissue-specific GCNs) and all the RNA-Seq datasets available in SRA (tissue independent).
Break down whole genome aggregate networks into individual-gene-centered or gene-list-centered subnetworks for a meaningful visualization of gene co-expression relationships.

EXHARA App
Use Exhara to inspect gene expression across all SRA-Seq runs used in the AggGCNs App. The fruit/flower and leaf data presented corresponds to the processed SRA runs in Orduña et al. (2022). Direct regulation of shikimate, early phenylpropanoid and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine. Plant J. doi: 10.1111/tpj.15686

DAP-Browse App

Conversions App
